DreALTA0009204-2/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000042990 | cyp2p10
Description
cytochrome P450, family 2, subfamily P, polypeptide 10 [Source:ZFIN;Acc:ZDB-GENE-040120-1]
Coordinates
chr20:25688981-25692242:+
Coord C1 exon
chr20:25688981-25689141
Coord A exon
chr20:25692066-25692137
Coord C2 exon
chr20:25692138-25692242
Length
72 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
CATAATTCTTTTTCCTTTAGCTC
3' ss Score
8.29
Exon sequences
Seq C1 exon
GTCGACCCTTTAACCCTCGCTTACTTTTGAACAACGCTGTATCAAATGTGATCTGTGTGCTGGTGTTTGGTAATCGCTTTGAATATAGTGACCATCACTTCCAGAATCTGTTAAACAAAATCAATGAATCAGTGTATCTGGAAGGAAGCATCTTTGTTCAT
Seq A exon
CTCTATAACATGTTCCCGTGGCTCATGCAATTGCTGCCTGGACCACACAAGAAACTTATTACTCTGTGGCAG
Seq C2 exon
AGGGTGACTGACTTTGTTCGAGAGAAGGTGAATGAACACAGAGCGGATTATGATCAATCAAGTCTTCGAGACTACATTGACTGCTTTCTAGCTGAGATGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042990-8-9,8-8,8-7-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACCCTTTAACCCTCGCTT
R:
TCGAACAAAGTCAGTCACCCT
Band lengths:
181-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]