DreALTA0009234-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000004964 | cyp4t8
Description
cytochrome P450, family 4, subfamily T, polypeptide 8 [Source:ZFIN;Acc:ZDB-GENE-031219-3]
Coordinates
chr16:4803778-4805255:-
Coord C1 exon
chr16:4805131-4805255
Coord A exon
NA
Coord C2 exon
chr16:4803778-4803932
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CCATTCTGATCTCATTGCAGTGG
3' ss Score
7.42
Exon sequences
Seq C1 exon
GATAAATGGGAAGTTCACTCCAGATCAGAAGAGTCCTTTGAGCTGTTTAAGCATGTAAGTCTCATGACGCTGGACAGCATCATGAAATGTGCATTCAGCTGTAACAGCAACTGTCAGACAGACAG
Seq A exon
NA
Seq C2 exon
TGGAACCAACCCGTATATCCAGGCAGTGTTTGACCTCTGCCACCTGGTGAACCTCAGGTTCAGAGTGTTTCCGTACCACAGCAAGGCCATATTTCATCTCAGTCCACATGGATACCGGTTCAGGAAGGCAGCCAGCATTGCACACAATCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004964-6-5,6-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.0=100)
A:
NA
C2:
PF0006717=p450=FE(12.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAAATGGGAAGTTCACTCCAGA
R:
GTGTGATTGTGTGCAATGCTGG
Band lengths:
278-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]