DreALTA0009269-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000069484 | dab2ipa
Description
DAB2 interacting protein a [Source:ZFIN;Acc:ZDB-GENE-081104-516]
Coordinates
chr8:12152008-12171655:-
Coord C1 exon
chr8:12171546-12171655
Coord A exon
chr8:12152162-12152164
Coord C2 exon
chr8:12152008-12152161
Length
3 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GCATGTGTTCCTCTCTCCAGTAG
3' ss Score
7.75
Exon sequences
Seq C1 exon
TTCCCAGTGGCTCTAAGCGGCAGCAGAGGTAGCAAAATGGAGCTGTGAGCCGCTTCATCCTCATCCTCGTCTTCATCGCCAGGGGACCGGGGATCTTGACGGCATGCCTG
Seq A exon
TAG
Seq C2 exon
ATCCCATCTGATGCCGAGGCTGAAGGAATCACGGTCTCACGAGTCGTTGCTCAGCCCCAGCAGTGCAGTTGAAGCTCTAGATCTCAGTATGGAGGAGGAAGTGCTCATCAAACCCGTGCACAGCAGCATCCTGGGACAGGATTTCTGCTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069484-3-4,3-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.302
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0016924=PH=FE(46.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTCGTCTTCATCGCCAG
R:
CTGAGCAACGACTCGTGAGAC
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]