DreALTA0010169-1/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000062083 | dph7
Description
diphthamide biosynthesis 7 [Source:ZFIN;Acc:ZDB-GENE-070410-57]
Coordinates
chr5:24577163-24577490:-
Coord C1 exon
chr5:24577396-24577490
Coord A exon
NA
Coord C2 exon
chr5:24577163-24577317
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
GTGTTGTGGTTTTCCAGCAGTGA
3' ss Score
5.62
Exon sequences
Seq C1 exon
CAGGGCTCCAGTGGTCTGGAGTGTGAGCTGAGCACAGATTTGGGTCCTGACAGACTGGCCTTGTCTTTAGACTGGTCCACAGGGCGAGGCGAGAG
Seq A exon
NA
Seq C2 exon
TGATGTGCGTGTGGTGTCCAGTGACTCCACTGGCTCTCTCACACTGCTGTCTCTGGGGGAAGCAGATTTAACCGCTGTGTGTCAGTGGAAAGCTCACGAATATGAAGCCTGGATCTCAGCGTTTAGTTACTGGGATACTCAGACTGTGTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062083-5-10,5-9,5-8-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGATTTGGGTCCTGACA
R:
TGAGAGAGCCAGTGGAGTCAC
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]