DreALTA0010332-1/4 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000060948 | dync1i1
Description
dynein, cytoplasmic 1, intermediate chain 1 [Source:ZFIN;Acc:ZDB-GENE-061215-62]
Coordinates
chr16:25403367-25406325:+
Coord C1 exon
chr16:25403367-25403481
Coord A exon
NA
Coord C2 exon
chr16:25406268-25406325
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAC
5' ss Score
5.88
3' ss Seq
GTCTCCCTCTTCGCAATCAGTGA
3' ss Score
6.5
Exon sequences
Seq C1 exon
TCTGAGATGCTTCAGAGGCCTGAGAATGTGACCGAAGACTCAGATCTAGACAGGAAGAGAAGAGAAACAGAGGCTCTTCTGCAGAGTATTGGCATTTCACCTGAACCACCATTAG
Seq A exon
NA
Seq C2 exon
TGAGTCCACCCAGCGAAACTGGAAGCCAGGAGTCCATAGATGGAGGGACAGTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060948-3-5,3-4,3-3,3-2-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGAGAATGTGACCGAAG
R:
CAGTTTCGCTGGGTGGACTC
Band lengths:
120-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]