DreALTA0010460-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000060877 | edil3b
Description
EGF-like repeats and discoidin I-like domains 3b [Source:ZFIN;Acc:ZDB-GENE-090312-42]
Coordinates
chr10:43566268-43566731:-
Coord C1 exon
chr10:43566657-43566731
Coord A exon
NA
Coord C2 exon
chr10:43566268-43566297
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
ACTTTCTGCTCTCTCAGCAGCGT
3' ss Score
8.6
Exon sequences
Seq C1 exon
GTGAAGTATGTGAACCAGTTCCCTGTGAGAACAGCGCTGACTGTCCCACAACACCAGCGGATGAAAATGGGTCCT
Seq A exon
NA
Seq C2 exon
CGTCAGACTGGAAAGAACAATCTATAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060877-2-2,2-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=NA C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATGTGAACCAGTTCCCTGTG
R:
AGATTGTTCTTTCCAGTCTGACG
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]