DreALTA0010582-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000068157 | ehmt1a
Description
euchromatic histone-lysine N-methyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-040724-44]
Coordinates
chr5:28904848-28906696:-
Coord C1 exon
chr5:28906488-28906696
Coord A exon
NA
Coord C2 exon
chr5:28904848-28904933
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGAGTATGT
5' ss Score
4.82
3' ss Seq
TTATGATTGTCTAACAGCAGGGT
3' ss Score
3.68
Exon sequences
Seq C1 exon
GGGACATTTATGGAGTGTCAGCCAGATGGGAACATCTCTCACCGCTTCCACCGGAGCTGTGCATCTCTGATCAGAGGCCAGGTCTACTGCCCTCACTGCGGTGAGGAGGCTAGTCATGCTAAGGAGGTCACGATCCCCAAACCTGACTGTGTGGCTTCAGTGCCAACAGCTGCTGTGCCGGCACACAAGAGAGACAACGCCTTAATGGA
Seq A exon
NA
Seq C2 exon
GGTTAAATTGGACTCTGTCATGGTTGATGGAGCAGGAGATCTTGCTAAAGAATCCCTGGAAAGTGTTTTAAATGCATTGGAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068157-12-16,12-15-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGACTGTGTGGCTTCAGTG
R:
CCTGCTCCATCAACCATGACA
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]