DreALTA0010590-3/4 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000026634 | ehmt1b
Description
euchromatic histone-lysine N-methyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-080515-3]
Coordinates
chr21:14567612-14568142:-
Coord C1 exon
chr21:14567980-14568142
Coord A exon
chr21:14567746-14567775
Coord C2 exon
chr21:14567612-14567745
Length
30 bp
Sequences
Splice sites
5' ss Seq
TAGGTTACA
5' ss Score
-5.21
3' ss Seq
CTCTCTTTATGCATCGACAGTTG
3' ss Score
6.42
Exon sequences
Seq C1 exon
CTTTTGAACAGGGAAAATAAAGAGCCAGTCGTGGTAAAAGATGACAGTGCAGGCAAACCAGAGGCAGTGCAGCCTCAGCCATCTCTAATCCAGAATCAGCTACCTCAAAGCCAAACTGACGCCACATCTGTACCGAACACCACACCTGCCAAGCCACAAATAG
Seq A exon
TTGAACCCAGACCTGTCTCTCCCTCAGTAG
Seq C2 exon
CAGCCGTATCAAGGAAGAAAAAAAGAAAGATGGGAACATATAGTCTTGTACCCAAGAAGAAAAACAAAGTCTTGAAACAACGCACAGTTCTGGAGATGTTTCAGCAGATATCCCAGTCTCCACCCAACCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026634-17-8,17-7,17-6,17-5-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.982
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCTGCCAAGCCACAAATA
R:
TCTCCAGAACTGTGCGTTGTT
Band lengths:
118-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]