DreALTA0010774-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000056765 | ela2l
Description
elastase 2 like [Source:ZFIN;Acc:ZDB-GENE-040511-1]
Coordinates
chr8:21338018-21338634:-
Coord C1 exon
chr8:21338498-21338634
Coord A exon
chr8:21338135-21338163
Coord C2 exon
chr8:21338018-21338134
Length
29 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
CTATTTTTGTGAATAACTAGCTA
3' ss Score
2.75
Exon sequences
Seq C1 exon
TAATGACATCGCCCTGATCAAACTGGAGACTGCTGTTACCATAGGTGACACCATCACTCCTGCATGTCTTCCCGAGGCTGGCTATGTGCTGCCCCATAATGCTCCCTGCTACGTCACTGGATGGGGACGTCTCTACA
Seq A exon
CTAATGGACCCCTGGCCGATATCCTGCAG
Seq C2 exon
CAGGCTCTTCTGCCCGTGGTGGATCATGCCACCTGCTCCAAGTCTGACTGGTGGGGCTCTCAGGTCACCACAAGCATGGTGTGCGCTGGTGGAGATGGTGTTGTTGCTGGATGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056765-4-9,4-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.8=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATGGGGACGTCTCTACA
R:
GCAACAACACCATCTCCACCA
Band lengths:
128-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]