DreALTA0011285-3/4 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000056012 | eve1
Description
even-skipped-like1 [Source:ZFIN;Acc:ZDB-GENE-980526-69]
Coordinates
chr3:23512592-23513203:-
Coord C1 exon
chr3:23513052-23513203
Coord A exon
chr3:23512785-23512830
Coord C2 exon
chr3:23512592-23512784
Length
46 bp
Sequences
Splice sites
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
3' ss Seq
TAAAATATTCTTTTCAGTAGCAG
3' ss Score
1.76
Exon sequences
Seq C1 exon
GAACTTGGCTTGGAAGAGAAACAGTGACGAGAGAGAATTGCTATTTTTTTAGTAGGGCCTGGTTTGGGAGTGTTTTGAGGACTATGAGAAATTAGTGAAAATCAATTACAGGAGTATTTGGATTGCGGAAGTGGATCCTAACGACAAAATGC
Seq A exon
CAGAGGACAGGGAGTCACCAGTGTCTACTGTTGCTCATGCTGACAG
Seq C2 exon
TGACCAAGGAGAGGAAGAATGCCCTCGTATTTCACTACTGAATGGTATCGACCAAAGTCGGCGGCACCGGACAGCTTTCACGAGGGAACAGCTGACTCGTCTTGAGCAAGAATACTGCAAAGAAAGTTACGTGTCTCGACCCAGGCGATGCGAACTGGCGGCAGCCCTTAACTTGCCCGAGACCACAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056012-0-3,0-2,0-1,0-0-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.373
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=PU(77.2=55.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAAGTGGATCCTAACGAC
R:
CAAGACGAGTCAGCTGTTCCC
Band lengths:
132-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]