DreALTA0011688-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000020596 | fam73a
Description
family with sequence similarity 73, member A [Source:ZFIN;Acc:ZDB-GENE-041010-193]
Coordinates
chr2:8876028-8879526:-
Coord C1 exon
chr2:8879406-8879526
Coord A exon
NA
Coord C2 exon
chr2:8876028-8876128
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
TCCCTTAGTTCTTCTGGCAGACA
3' ss Score
5.1
Exon sequences
Seq C1 exon
GACATTATCAGTGCAGATTTCATCCAAAAGCTGGAGTCTCTGCTACAAAGAGCCTATCGCCTCCAGGAGGAGTTTGAAGGATCGCTGGGAGTGACAGACCCTACTACACATCCTACTAATG
Seq A exon
NA
Seq C2 exon
ACAAGCACATGGATCTTTCCGTGCGGGAGGAATTGGAGGACACCTGTCTCAGAGATTCAATCAGCATCGCCTCGACAGATTCCTTCGTGTCTGCTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020596-9-12,9-11-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(7.4=100)
A:
NA
C2:
PF102654=DUF2217=FE(6.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTTTGAAGGATCGCTGGG
R:
AGGTGTCCTCCAATTCCTCCC
Band lengths:
98-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]