DreALTA0011775-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000051896 | fbn2a
Description
fibrillin 2a [Source:ZFIN;Acc:ZDB-GENE-090112-4]
Coordinates
chr10:16464187-16475935:-
Coord C1 exon
chr10:16475813-16475935
Coord A exon
chr10:16464340-16464699
Coord C2 exon
chr10:16464187-16464339
Length
360 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TCTCTCTCCTCTCCCAACAGCCA
3' ss Score
11.35
Exon sequences
Seq C1 exon
ATATCGATGAGTGCCGGACTCCAGGTGTGTGCATGAATGGACGATGTGTAAACACACAGGGCTCTTTCAGGTGTGAGTGTTTTGCAGGTCTTACTGTTGGAATAGACGGCCGAACATGTGTAG
Seq A exon
CCAATCACGGGAAAGATCCAATGATCGCTACCAGGTGGACACAGTTTCCTGCAGGGAGAGAGAGAAAAACACACACAGAGAGAGAGAGAGAGGGAAAACACAAAGCACATTGTGCACACCAAAAGATACGTCTTAGGACTTAACACTGTGCATTTACAATAAACTAATAAAACAGTATATAATAGACTGCAGAGTAAAATACTTTGCAGAACACAATTATTCAAATAATTTTTGGAAATGTTCAGTGAAGTTTTCTGTAGCTATATTTGTGGTTCTAGGGAGGTGTTTTTTGTTCCTGTTGTGTTTCCTGTAGCAATGTGGTATAGTTTTGACAATCTTCCTTGCATATTTTTGTTGCAG
Seq C2 exon
ACACACACATGCGTAGCACCTGTTATGGGGCTGTAAAAAGAGGTTTGTGTTTACGACCCTTCCAGCGTGCTGTCACCAAGTCACAGTGCTGCTGTGCCAACCCTGACTATGCTTTTGGTGAACCCTGCCATCCCTGCCCTGCCAAACACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051896-18-18,18-17-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF062476=Plasmod_Pvs28=PD(0.1=0.0),PF126622=cEGF=PD(12.5=7.1),PF0000822=EGF=WD(100=83.3)
A:
NA
C2:
PF0068312=TB=PU(86.0=71.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCGATGAGTGCCGGACT
R:
CTGAGTGTTTGGCAGGGCAG
Band lengths:
276-636
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]