DreALTA0011856-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000086484 | fbxw10
Description
F-box and WD repeat domain containing 10 [Source:ZFIN;Acc:ZDB-GENE-101021-1]
Coordinates
chr12:35859324-35861735:+
Coord C1 exon
chr12:35859324-35859521
Coord A exon
chr12:35860233-35860265
Coord C2 exon
chr12:35860266-35861735
Length
33 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
3' ss Seq
GTCCTTCATCTTATTAAAAGATA
3' ss Score
4.63
Exon sequences
Seq C1 exon
TTGCTCAGCGGGAGTCCACAAGGGCGGCGATGTGGAGTAAGCTCCAGGCTTATAGTCACAGCAGGACCTCCATCAACCTCCAGTCTGAGTTCATCACCAGACCCCGATCTGTTCTCTCAGCAGGCAAGCCTGTCAGTGGATACAAGGGCTTTCAAAACAGAGTCAGCCACACACCAAGCACTGCTACCAGCAGCTCGG
Seq A exon
ATAAGAAGACTAAAAATGACATCAAACACTCAG
Seq C2 exon
TACTCAGCCGGAGTGAGAAGGCAGTCCGAGAGAGGGTAAGAAAGCGAGGTCCTCACCACCCTGTGACCCCTGAACGAATTCTGCTCAGGGCTGGAAGCTCCCAGCAGGGCCACAACAGTGACCCAGCTCGGTCTAACATGGAGCTGAATGCCAGAGTACGAGATGCCTGGGGTCCAGACACATGCAGACAGCCATCCTTTCAAACCAGCACCAAAAAACCATCAGAAACCAATACACCATTCACAATGCACAGTGTTGACCTCAACCCTCAGAGCTCCTTACAGGCACACTCTACTTCCAAACAATCGCAGAGATCACTGAAAGTAAATAAGATCGACCCCCTTAATGTAACTTGTCTTGAAGATGACAAAACGCCACAGGGATTGCTTGTGAGGCAAACTTCCATGCCCAAACATTGCCATGAAGATTTGGAAATGACCACCAAGTCCAGTTTACGTCACATCCAATTAGACCCCTACAAGAGGTCTGAAGTCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086484-12-13,12-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.791 A=NA C2=0.860
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATCTGTTCTCTCAGCAGGC
R:
CTCTCTCGGACTGCCTTCTCA
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]