DreALTA0012298-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000067985 | ftr23
Description
finTRIM family, member 23 [Source:ZFIN;Acc:ZDB-GENE-070912-322]
Coordinates
chr2:48053827-48054582:+
Coord C1 exon
chr2:48053827-48054409
Coord A exon
NA
Coord C2 exon
chr2:48054508-48054582
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
AACTGTTGTTGGACTTACAGAGA
3' ss Score
4.58
Exon sequences
Seq C1 exon
CCATCCCCTGTGGACACAGTTACTGTATGAACTGCATTACTGACTGCTGGAATCAAGATGAGCAGAGGAGAGTTTACAGCTGCCCTCAGTGCAGACAGACCTTCACTCCAAGACCTGCTTTAAACAAGAACGTGGTGATGGCAGAAATGGTGGAGAAACTGAAGACAGGATCAAGAAATGCTGCAAGTTATGCTGGACCTGGAGATGTGGAGTGTGATGTTTGCACAGGAAGGAAGCGCAAAGCTGTTAAATCCTGTCTGATGTGTCTGAACTCTTACTGTCAAACTCACCTTGAACAACACGATAGCTTCTTTAAAGATAAGAGACATCATTTAATCAATGCCACTGGACGACTGAGGCAGATGATCTGCTCTAAACATGACCGACTGCTGGAGGTTTACTGTCACACAGACCAAAAGTGCATTTGTTTACTGTGTATGATGGATGAACACACAGGTCATCAAACTGTTTCAATTAAAACAGAGAGGGCTGAGAAACAA
Seq A exon
NA
Seq C2 exon
AGAAACTTCCAGAAGACAATCCAGGAGAGAGAGGAGGAGGTTTGGGAGCTGAAACATGCCGTGAAGACTCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067985-2-2,2-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF152271=zf-C3HC4_4=WD(100=22.3),PF0064319=zf-B_box=WD(100=21.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGATGAACACACAGGTC
R:
CCTCCTCCTCTCTCTCCTGGA
Band lengths:
102-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]