DreALTA0012484-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000060631 | garnl3
Description
GTPase activating Rap/RanGAP domain-like 3 (garnl3), mRNA [Source:RefSeq mRNA;Acc:NM_001128527]
Coordinates
chr5:32781927-32784914:-
Coord C1 exon
chr5:32784799-32784914
Coord A exon
NA
Coord C2 exon
chr5:32781927-32782031
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
AGGTTCCCTTCTCTCCGCAGAAC
3' ss Score
11.68
Exon sequences
Seq C1 exon
TAATAAATGGAGAAAAAGCCACTCTTGAGACCCCCACTTTTGCTCAGAAACGTCAGCGTACACTGGACATGCTGATCAGATCCCTGTACCAGGATCTCATGCCTGACATGCACAAG
Seq A exon
NA
Seq C2 exon
AACATGCTGAATCGACGCTCATTCAGCGATGTCCTGCCAGAGTCACCTAAATCCGCCCGGAAAAAAGAGGAGGCACGTCAGGCTGAGTTCGTTAGGGTGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060631-17-18,17-17-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.368
Domain overlap (PFAM):
C1:
PF0214510=Rap_GAP=PD(14.9=71.8)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTACACTGGACATGCTGAT
R:
GCGGATTTAGGTGACTCTGGC
Band lengths:
117-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]