DreALTA0013040-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000103200 | gpr107
Description
G protein-coupled receptor 107 [Source:ZFIN;Acc:ZDB-GENE-061103-130]
Coordinates
chr5:31885099-31886523:-
Coord C1 exon
chr5:31886384-31886523
Coord A exon
chr5:31885125-31885127
Coord C2 exon
chr5:31885099-31885124
Length
3 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
3' ss Seq
TTTGTCCTCTTTATTTCCAGCAG
3' ss Score
9.24
Exon sequences
Seq C1 exon
TGTCAAGAAAAAGACTTCAGCAGAGACGGGCGTTTTTCCCAAAATCATGGCTGTGCCACCTAAAAAATCTGAAGAGGTGCAAGTTGAAAAGGGGAAGGAACCCCAAAACAAGGAGCCAGATGATGGATCTCAGTCTAAGG
Seq A exon
CAG
Seq C2 exon
CTTCTAAATCCAAGCGTGATGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103200-7-5,7-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.521 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGGTGCAAGTTGAAAAGGG
R:
GCATCACGCTTGGATTTAGAAG
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]