DreALTA0013053-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000090804 | gpr155a
Description
G protein-coupled receptor 155a [Source:ZFIN;Acc:ZDB-GENE-100922-89]
Coordinates
chr9:2472649-2476691:+
Coord C1 exon
chr9:2472649-2472886
Coord A exon
chr9:2476240-2476256
Coord C2 exon
chr9:2476257-2476691
Length
17 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
CTTTTACCCTTCATATTTAGTTA
3' ss Score
7.02
Exon sequences
Seq C1 exon
TTGGCGCGCTGAAGTTCTTTTCGTAATGGTTGCTTCACCGCAGCAGTGTGTGTGTGTGTGTGTGTGCGCGTTTTCAGATAAGAAGACACATGCTACAGCCCCCCCCACACACACAGTCACACACAAACAGAGGAAAGCCGATGCGGAAGAGCAGTTGTGGATCTGAGAGGAGACAACATGACTGAAAGTGTGTTACTGTGTTTCCCCGATCGGATTTACCCCAGAATCAGCTGATCCG
Seq A exon
TTACTTCCTGATTGCAG
Seq C2 exon
TAAAGCTCAGGATGGAGGATCTGTTGGGGAACGTCTCCGTCTCCAGCAGGGATGAATCTGGCGCTCCGACCGTCCCGCCTAGCATGTCCATCGACAAACTCCTCCCGGCCCTGCTCGAATGTTTCGGGATAATTCTCTGCGGATATGTGGCGGGACGCACCAACATCATCCTGGCGACTCAAGCTAAAGGACTGGGCAGTTTTGTGTCCAAGTTTGCTCTTCCGGCTCTGCTTTTCAAAAACATGGTGTTGCTGGACTTTGGGGACGTGATCTGGCCCTTTTTCTTTAGTATCCTGGTGGCCAAAGTGACCGTTTTCTTTTTCGTATGTGTATTAACGCTCTTGGTGGGGAATCGAGAGAGCCGTTACTCCAAAGCTGGCCTGTTCCCCATTTTTGCAACGCAGAGTAATGACTTTGCTCTTGGATTCCCTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090804-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0354713=Mem_trans=PU(68.3=78.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTTGTGGATCTGAGAGGA
R:
CCCCAACAGATCCTCCATCCT
Band lengths:
118-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]