DreALTA0013245-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000020642 | gtdc1
Description
glycosyltransferase-like domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050417-8]
Coordinates
chr9:26076350-26079429:+
Coord C1 exon
chr9:26076350-26076445
Coord A exon
NA
Coord C2 exon
chr9:26079268-26079429
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
CTGATAATAAATCCCAGCAGTTA
3' ss Score
1.68
Exon sequences
Seq C1 exon
ATTCCTCCCTGCACACAAGCGTCTCAGGCATCCAGTGCGGTGTGATGATATCCACGCTCCGGCTGCTAAAAGCCACATTCAGACATCAAGTCCAAG
Seq A exon
NA
Seq C2 exon
TTACCCAGACGTCGAGCCACCTGAAAAGATGCTCAATGTGGCTGGAACAAATCAGTCCCATGAGCCCACCAGTGTCACACCACATCAGGAAACAGCGTCCCCTTTGTGTGGTCACGAGGGAGAGAAACTGCGGCCACTGCACATCGTCTGGCCACATCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020642-9-7,9-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=NA C2=0.694
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053415=Glycos_transf_1=PU(10.3=29.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCAGTGCGGTGTGATGAT
R:
AGCATCTTTTCAGGTGGCTCG
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]