DreALTA0013738-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000037154 | hivep3b
Description
human immunodeficiency virus type I enhancer binding protein 3b [Source:ZFIN;Acc:ZDB-GENE-100922-42]
Coordinates
chr16:34383886-34384507:-
Coord C1 exon
chr16:34384156-34384507
Coord A exon
NA
Coord C2 exon
chr16:34383886-34384005
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
CCTCTCTGTCTGGAGTGTAGGTA
3' ss Score
3.19
Exon sequences
Seq C1 exon
GGAGGAGGAAAGGGAAGAGGCAGAACACCGGTATGCTCCAAGGGTAGCTAGTCCAGTGAGAATCGTGGATCCTTCATATCCTAGTTTGCATACAACAACATCTGTCAGTTGGTGCTACCTAAATTATACAAAGCCCAACCCATCTACACATAGAGATTCAACATCAGTCTATTCCTCATGGAGTGTTAGCATGCATAACCCCAATATACCTGGTTTGTCCACCAAAATATTACTATCTCTGTTGCGCTCAAAACAAAAACATAGTGCTGAAACATACACAATGGCTACAGCTCCACCACCAACCATTGACAAGCTGGTTTCTACAGACAGCAAGGAGACCAGTGCATCAGAG
Seq A exon
NA
Seq C2 exon
GTACATGCCTCACCACCCAGCACCCCCGTCAAAGTAAAAGAGGAACCAACAAGTGAAAGTAGGGACAAAGATAAGGAGAGTGCTGATGACATGCCAGCTACCTCGACTCAAAATGAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037154-1-3,1-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.602 A=NA C2=0.776
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGCTCCACCACCAACCAT
R:
TTTACTTTGACGGGGGTGCTG
Band lengths:
105-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]