DreALTA0014365-3/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000086724 | im:7151449
Description
im:7151449 [Source:ZFIN;Acc:ZDB-GENE-041111-283]
Coordinates
chr6:47506229-47507826:-
Coord C1 exon
chr6:47507519-47507826
Coord A exon
chr6:47506336-47506390
Coord C2 exon
chr6:47506229-47506335
Length
55 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TGTGTTTGTGGTTGATTTAGCGA
3' ss Score
6.42
Exon sequences
Seq C1 exon
GTCTTGATTTACATGAGTGAACCGTGTTCTCGTCAGATGTTCTGGCTATGAAGGGCTTTTTCGTCGTAGTTTTCCGCTTTTCATTTCACCTGCGGCTGGAATCTCAATATAGAGAAAGTCTTTAGCCGCGTAGGGATTTCTTGTTTAGTGGGATTTAGTGGGATTACCTCTGCGTTCAGTCCGTTAGTTTTGTTTCTGGTCGCTGTTTCTTATTTAGTTGTTGATAAGAGCTCTTTAAGCGAAGATGACAAGTGTGAGGACTTTGTTACTACTTTTCCTGTCATCTTTGCTGGTAACTATGGGGAAAG
Seq A exon
CGAAATGTTTGTTCCCTGTTTTGAATGGCAACCATGTCTTATCCTTGGAGTCCAG
Seq C2 exon
ACTGAAAAACGAATTCCCCGATGGTTCAACCGCTGTGGCTGAGTGTGCAAGAGGATACGAGGCAAAGGATGGATCACCTTTAATCACTTGCCAGAATGGAAAATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086724-0-2,0-1,0-0-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008415=Sushi=WD(100=93.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGAAGATGACAAGTGTGAGG
R:
GCCTCGTATCCTCTTGCACAC
Band lengths:
134-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]