DreALTA0014366-4/4 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000086724 | im:7151449
Description
im:7151449 [Source:ZFIN;Acc:ZDB-GENE-041111-283]
Coordinates
chr6:47493604-47493835:-
Coord C1 exon
chr6:47493749-47493835
Coord A exon
chr6:47493652-47493660
Coord C2 exon
chr6:47493604-47493651
Length
9 bp
Sequences
Splice sites
5' ss Seq
GTAGTAAGA
5' ss Score
3.51
3' ss Seq
TTGAATGTGTTTTATTGCAGAAG
3' ss Score
8.29
Exon sequences
Seq C1 exon
CTATCCTACTACAGCCAGAAGAAACCACCACAGTTGTTGCATCAACAGTCACCACAGACATTGCAACAACAAACGCAGTATTCTGTA
Seq A exon
AAGAAGAAG
Seq C2 exon
AAGAAGAAGAAGAGGAGGAGGAGGAGCACTTCATTACTGTCTCGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086724-9-12,9-11,9-10,9-9-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.550
Domain overlap (PFAM):
C1:
PF0243010=AMA-1=FE(18.8=100),PF0200911=Rifin_STEVOR=FE(20.9=100),PF133471=MFS_2=FE(29.6=100)
A:
NA
C2:
PF0243010=AMA-1=FE(12.3=100),PF0200911=Rifin_STEVOR=FE(13.7=100),PF133471=MFS_2=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGAAGAAACCACCACAGT
R:
ATGAAGTGCTCCTCCTCCTCC
Band lengths:
108-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]