DreALTA0014734-3/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35615895-35618124:-
Coord C1 exon
chr11:35617995-35618124
Coord A exon
chr11:35616062-35616103
Coord C2 exon
chr11:35615895-35616061
Length
42 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
ATGTCCTGGTTTTTCATCAGGGG
3' ss Score
7.86
Exon sequences
Seq C1 exon
AGTGAGGCTTTGAGGCAAGTCCTGGTTAACCGTTACTATGGCAACTTCAAACCGGGCGGCAGACGAGACAGTTTGACGAATTTCAGCAATGGGCCGCTCACCCCTGTTGGGCAGACGAAGACTCCTGCAG
Seq A exon
GGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTTCAGCAG
Seq C2 exon
GGAGTCGGGGAGAGCTGAGTCTGGCTGAAGTGCAGTGTCACCTGGACAGAGAAGGAGCTTCTGACCTGGTCATTGACCTCATCATGAATGCCACCAGTGACCGGATCTTCCAGGAAAGCATCTTGCTGGCCATCGCTCTGCTTGAGGGAGGAAACCCCGTCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-48-46,48-45,48-44-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.530 A=NA C2=0.267
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAGTCCTGGTTAACCGTT
R:
ACTTCAGCCAGACTCAGCTCT
Band lengths:
148-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]