DreALTA0014921-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000029881 | kcnh2a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 2a [Source:ZFIN;Acc:ZDB-GENE-070912-699]
Coordinates
chr2:24505840-24506289:+
Coord C1 exon
chr2:24505840-24505960
Coord A exon
chr2:24506035-24506037
Coord C2 exon
chr2:24506038-24506289
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
AATGGAGTTCCTCTTAAAAGCAG
3' ss Score
1.04
Exon sequences
Seq C1 exon
ACTAACACTAAAGCTGGGTCAATGAGCAGTGACCCTGATGATTCGGACAATGGCGGTCTGGACCATCACACACGCAGAGCAAAGTTGTTCTTTCAATCTAAAAGAAACTCCATCTCTCGAG
Seq A exon
CAG
Seq C2 exon
ATACAGAGAGAACAGAAGACAGGCTCAACAGGATGACTTTCAGAACACAGACTTCAGGAAAACAGCATGAGAACAGACAAACTGCTCATCGCAGCTCAGACATCTTTGCCTCACAGTCAAGCAGCGATGAAGAGGAAGAGACTCAACGACCCTCTGTGATGGTGGACTGCTCTCAGAGCCATATCAATAGCGTTAGCAATGCTAACAGGGACAAGGACCACAACAGCAGTAACTCGTTCAACGCACTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029881-14-13,14-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.756 A=NA C2=0.965
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACACACGCAGAGCAAAGTT
R:
AGTCATCCTGTTGAGCCTGTCT
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]