DreALTA0014927-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000001803 | kcnh6a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 6a [Source:ZFIN;Acc:ZDB-GENE-040702-5]
Coordinates
chr3:31602379-31603541:-
Coord C1 exon
chr3:31603248-31603541
Coord A exon
chr3:31602560-31602562
Coord C2 exon
chr3:31602379-31602559
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
CTATCTCCTCCTCCATCCAGCAG
3' ss Score
7.82
Exon sequences
Seq C1 exon
ATGGGATGGACCGGGATGGGATGGACACATACCCAGTCCAGCCCTGTTCTCCTGTGGGGAACCACCGGGGGGCGATACCGCTGTCACAGTGGGATGAGTTGTGTAGTGATGGCAGCCCTGCTTCTCTCTCCAGTGAAGAGGATATGAAGCCTCTGGTGTCCGGCCAGGGGGATATGTACTCACTGGGCACAGAGATGCAGGAATTCTCCCCTTCTGCAGTCAGTCTTATGCCCTCCGCCCACAGCACTGCTTCTGCCATGGCTGGACCGCTGACAGGTGCACATCAGTACACAG
Seq A exon
CAG
Seq C2 exon
CCCCTCTGAACATTTCAGGGGTATACAGCTATTTGTCGGACCGCAGGGCCAGTGAGTACTCAGAGAGTCAGAGACGTTCCTCTGCGGTGCAGGCATGCTATCACCATCACAGCCCCTGTGTGGGGGACAGACCGAATCAACTACAGGCCCGTCTGGAGCTGCTGCAGTCACAACTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001803-14-17,14-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.768 A=NA C2=0.613
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGACAGGTGCACATCAGTA
R:
TCTCTGAGTACTCACTGGCCC
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]