DreALTA0014994-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000036593 | kdm2ba
Description
lysine (K)-specific demethylase 2Ba [Source:ZFIN;Acc:ZDB-GENE-040426-2195]
Coordinates
chr8:40211000-40212403:-
Coord C1 exon
chr8:40212086-40212403
Coord A exon
chr8:40212004-40212006
Coord C2 exon
chr8:40211000-40212003
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CATTTCTTGAGTTTTTTTAGCAG
3' ss Score
0.73
Exon sequences
Seq C1 exon
GCCTGCAAGCAAAAACGGGGCCCAGGATTTAAGTACGCATCCAACTTGCCCGGGTCCCTGCTGAGGGAGCAAAAAGCTGGACGTGACGGAAGAGAGGAAGGGGACCAGACATCCACTGGACCGGCATCCATCAAGAGGAAGACTGAGAGGGAGGAAACTCCCAGATTGAAGACTGAGGATTTACCCTCACGCCTTCCCCCACTGTTGTCCCCAAGTGGCCTGCCAAGACCACGATCTGAAGTGCCCAACTTCTTGAGGAAGAAAAGGAAGTTATTTGACGATGATGAAGAGGAAGAGGAGGCTAGTGCTAAAAAGAAG
Seq A exon
CAG
Seq C2 exon
AAGAAACCATGGAGACCTGAAGAACCTTTGATTCCCAAACTTTCTCACATGAAAGCAGAAGAGGAGGAAGACAACTCTGATGAGGAGGAAGAAAGGCAGGAAAAGCGAGAACAACCTCGTCGATCAATAAAAAAAGACTATAGCATAGTGAGAAAAGAGGAAGAGCGTGAGGAAGACAGACGGGAGGACAGAGATCCCCCTTTCAGATCCTTAAAGGAGTTCCACAACATGAGTAAAGAGGAAGATCATGATGAAGAAAAGGAAGACGATGATGAGGAAGAGGAAGAGGAGAGTAATGGGAAACGAGGAAGGGACAGCAGCCCTGCACTAAAAAACCTTTCTCTCTCGCTTGAGAGTGATGCTTCACGGTGCAGCTCTCCAAGGGCTGGACCGAGCAGCGAAGGAAGTGAGACACAAGAGAAGGCCCCACGTGCTCGAGCAAGGCGACACCGGCGCAAGCCTCCAAACCGCCAGCTCAGTGCAGAGCTCAGCAAGCAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036593-12-12,12-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.868 A=NA C2=0.827
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0064628=F-box=PU(77.6=13.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAGAGGAGGCTAGTGCT
R:
AGTTGTCTTCCTCCTCTTCTGCT
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]