DreALTA0015244-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000074131 | kif5ba
Description
kinesin family member 5B, a [Source:ZFIN;Acc:ZDB-GENE-070629-2]
Coordinates
chr2:43861473-43863286:-
Coord C1 exon
chr2:43863143-43863286
Coord A exon
NA
Coord C2 exon
chr2:43861473-43861658
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
3' ss Seq
ATGTCATTTTTCTGCAGCAGCAT
3' ss Score
4.03
Exon sequences
Seq C1 exon
AGCACCCTGGCATCTATTGACTCAGAGCTGCAGAAACTGAAAGAAATGGCCAATCACCAGAAGAAGAGGGTGACCGAGATGATGTCCTCTCTGCTCAAAGATCTGACTGAGATTGGCATTGCTGTGGGCAACAATGACATCAAG
Seq A exon
NA
Seq C2 exon
CATGAAGGCAGTGGTCTTATAGACGAAGAGTTCACTGTAGCCAGACTCTACATCAGCAAGATGAAGTCCGAAGTCAAATCAATGGTCAAACGTTGCAAACAGCTGGAAAACACTCAATCTGAGAGTAACAAAAAGATGGATGAAAGTGATAAGGAGCTTGCAGCATGCCAGTTACGCATCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074131-17-20,17-19-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.458 A=NA C2=0.452
Domain overlap (PFAM):
C1:
PF045827=Reo_sigmaC=FE(35.3=100)
A:
NA
C2:
PF045827=Reo_sigmaC=PD(11.3=24.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATTGGCATTGCTGTGGG
R:
TCTTGCTGATGTAGAGTCTGGCT
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]