DreALTA0015969-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36838558-36841034:+
Coord C1 exon
chr9:36838558-36838677
Coord A exon
NA
Coord C2 exon
chr9:36840864-36841034
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTGTGTATCCATTTAACCAGAGC
3' ss Score
5.16
Exon sequences
Seq C1 exon
AAATCAATGAGTGTCTTTATTTTGGCACTTGCTCTCACTATTGCACAAACACAAAAGGATCATACAAATGTACATGTGACAAAAATTATAAGGATATGAATGGTAGCTGCATAGCAAAAG
Seq A exon
NA
Seq C2 exon
AGCCATGGACACAAAGTACATGCTCGCATCGAGGAAAATGCCCGCATTATTGGGATGGATGCTCTGTTTCACCAACAAAAGTTTATCTGGGCTACTCAATTTAATCCCGGTGGACTTTTTTACAAAGACATCCTAAACAGGAGTCAAACTAAAACAAATGTTGGCATCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-77-79,77-78-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=92.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACTTGCTCTCACTATTGCA
R:
GGTGAAACAGAGCATCCATCCC
Band lengths:
170-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]