DreALTA0016948-1/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000056330 | mhc2dbb
Description
major histocompatibility complex class II DBB gene [Source:ZFIN;Acc:ZDB-GENE-010112-2]
Coordinates
chr18:29945105-29945434:-
Coord C1 exon
chr18:29945321-29945434
Coord A exon
NA
Coord C2 exon
chr18:29945105-29945205
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
ATGTCCTTATTTACTAGTAGGCA
3' ss Score
4.02
Exon sequences
Seq C1 exon
ATTCATTTTTGACAGAGTCAAACAAGAATAAGATAATAACTGGGGCTGCAGGAATAGTTCTGGGGGCCATAATGGCTGCCGGAGGACTGATCTACTATAAAAGAAAACACACAG
Seq A exon
NA
Seq C2 exon
GCAACACATCAGCTGGAAGTCAATACATCGGATGCTCTGAACCTCTGCAGACCCTCAGCGAGTAAATGAAGATGTGCAGTGGATAAGCACAGACTGTGTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056330-3-5,3-4,3-3-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]