DreALTA0017449-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000054903 | mta3
Description
metastasis associated 1 family, member 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6485]
Coordinates
chr12:25180422-25184349:+
Coord C1 exon
chr12:25180422-25180453
Coord A exon
NA
Coord C2 exon
chr12:25184228-25184349
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CTCTTCTCTTTTTTCAGCAGCAT
3' ss Score
7.29
Exon sequences
Seq C1 exon
AAAATCCAGCTCATATTGTGGGGCCCATTCTG
Seq A exon
NA
Seq C2 exon
CATAATGGGAGCAGCACCGGTGGCTCCAGCCTTCGTGGCAGTGGCTTGATGCTCCGTAAGAGACGACCCAACTGGATCGATGCTCCTGATGACAGCTTCTTCCTGGTTTCCCGAGAGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000054903-23-23,23-22-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.607
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATATTGTGGGGCCCATTCTG
R:
GAGCATCGATCCAGTTGGGTC
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]