DreALTA0018688-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000056156 | npdc1b
Description
neural proliferation, differentiation and control, 1b [Source:ZFIN;Acc:ZDB-GENE-140106-58]
Coordinates
chr5:28278311-28287252:-
Coord C1 exon
chr5:28287106-28287252
Coord A exon
NA
Coord C2 exon
chr5:28278311-28278403
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCTCTTTGTTCTCTAAGCAGCCA
3' ss Score
6.69
Exon sequences
Seq C1 exon
TTGTAGGGCATTGTCCTCGGAGCCTGGATTGTGCCCGAGAGAGACGGCACTTCTGCCAGCCCGGCTCTTTACATTGCGGCCCATGTCTAGACCCATTCATGGAGAACAAACGAGGGAAGTGTGTGCTCAGGAGACGAAATCATCCTG
Seq A exon
NA
Seq C2 exon
CCAAAGTCAGCCATCTCCCAGAGCTGGATGAAGAGATAGACATACTGTCCTCCATCATCAGCAAACACAGAGAATCTGAGATGAAGCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056156-2-4,2-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.323
Domain overlap (PFAM):
C1:
PF068096=NPDC1=FE(16.2=100)
A:
NA
C2:
PF068096=NPDC1=FE(10.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACATTGCGGCCCATGTCT
R:
CTGGGAGATGGCTGACTTTGG
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]