DreALTA0018776-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000003607 | nr2f6a
Description
nuclear receptor subfamily 2, group F, member 6a [Source:ZFIN;Acc:ZDB-GENE-030131-4362]
Coordinates
chr2:24721041-24726390:+
Coord C1 exon
chr2:24721041-24721135
Coord A exon
NA
Coord C2 exon
chr2:24725997-24726390
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
CTTCTTCTCCCCTTTAGCAGTTC
3' ss Score
6.61
Exon sequences
Seq C1 exon
ATCAAACCGAGACTGCCAAATTGACCAGCATCATCGCAACCAGTGTCAATACTGCCGTTTAAAGAAGTGTTTCCGAGTGGGAATGCGTAAAGAAG
Seq A exon
NA
Seq C2 exon
TTCAGCGTGGACGGATCCCACCTTCACATTCGAGCCTGAGCCCATCTACAACTCCAGTAGGCGGTAATGCCGGCGGTGGTGTGAGCGAGTTCTACAATGGGCAGCCGGTGTCCGAGCTCATCTCCCAGCTCCTGCGGGCAGAGCCTTACCCTAACAGCCGCTACAGCCACCAGTACAACCAGCAGATGCAAGGCGGTGGTGGCGGTGGATCTGGCATGGGCATCGACAGCATCTGTGAGCTCGCTGCCAGACTCCTGTTTAGCATCATCGAATGGGCCCGAAACATTCCGTACTTCCCCGAATTGCCAGTATCGGAGCAGGTGGCCTTGCTGCGGCTCAGCTGGAGCGAACTGTTTATTCTGAACGCAGCTCAATCTGCCCTGCCACTGCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003607-6-7,6-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.181
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(42.9=90.9)
A:
NA
C2:
PF0010425=Hormone_recep=WD(100=43.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATCATCGCAACCAGTGTC
R:
CGAATGTGAAGGTGGGATCCG
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]