DreALTA0018786-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000039116 | nr5a5
Description
nuclear receptor subfamily 5, group A, member 5 [Source:ZFIN;Acc:ZDB-GENE-030131-4652]
Coordinates
chr3:53209746-53210560:-
Coord C1 exon
chr3:53210363-53210560
Coord A exon
NA
Coord C2 exon
chr3:53209746-53209856
Length
0 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TGTGATATCCCATAGCTCAGGAG
3' ss Score
-1.34
Exon sequences
Seq C1 exon
GCCTGCGCCTGTTTTCCTCCCTGTCCTGAATCCCGGAGGCCCACACAGGTATGAATGACAGCTTACAGTAACCCACACCGCCCCTGCTCCTATGCACCATGAACATCTCAAGCTATCCCCTGGATCCCCCCCAGCCCTCGGTTCATCTGGCGGCCGAATTCACACAAGACCATGCGTCACAAGAGAGACCGTCAACAT
Seq A exon
NA
Seq C2 exon
GAGTTAAAGCCAGACCCAGAGAGTAGTGCGACTCAAGAAGAGGGCTGTCCTGTGTGTGGCGACAGGGTGTCTGGATATCACTATGGTCTACTTACTTGTGAGAGTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039116-0-2,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.968 A=NA C2=0.237
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0010513=zf-C4=PU(32.9=62.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACACAAGACCATGCGTCAC
R:
ACACAGGACAGCCCTCTTCTT
Band lengths:
94-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]