DreALTA0018886-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000060025 | nsmfa
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor a [Source:ZFIN;Acc:ZDB-GENE-091204-32]
Coordinates
chr21:13397396-13438872:-
Coord C1 exon
chr21:13438720-13438872
Coord A exon
NA
Coord C2 exon
chr21:13397396-13397449
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
TGTGCTCTTTTGCAGAGCAGCTC
3' ss Score
-0.13
Exon sequences
Seq C1 exon
TCGTATTTTTCCACGCGTTTTCATCCCATGCTTTGACATCTGGAATGTGTGGTTTTCCTGCAAGCGTTGTTTCCATGCCAGCATGGGAACTGCAGTGTCCAAAAGGAAGAATCTGAGAAATGATGCGATTTCTTCGGTGGCAGCCAAAGTTAG
Seq A exon
NA
Seq C2 exon
CTCGTGCATTTGGAGAGTACCTTCACACCCATCCTGAGAACTGCAACGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060025-0-2,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.431 A=NA C2=0.238
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGGAACTGCAGTGTCCAA
R:
TGGGTGTGAAGGTACTCTCCA
Band lengths:
103-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]