DreALTA0018943-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000022531 | ntn1b
Description
netrin 1b [Source:ZFIN;Acc:ZDB-GENE-990415-168]
Coordinates
chr3:25681864-25683274:-
Coord C1 exon
chr3:25683029-25683274
Coord A exon
NA
Coord C2 exon
chr3:25681864-25682909
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTATAG
5' ss Score
7.13
3' ss Seq
TTCTTTGTTGACTAGTGCAGGTT
3' ss Score
3.78
Exon sequences
Seq C1 exon
GCAGAAAGAGAGAAGGGCTGAGCTGCGACACTCACTCACAGAGAGGCAGAGGTGTGAAAGAGTTAGGCAGAGGAAGAAAGGCAGACTTGGAAAGTAATAGCAGGTTTTCTGTTTCATATTGCTTGAAAGTGGGGAAAGAGATTACAACATATCCGGGAGAGAGAAAAGAAAGGGAGAGTACCCTATAATTTCTCTTTTAGACGGGTTTGACATACTTCTCCACCCGGGTGAAGCAGTCTCTTTGAG
Seq A exon
NA
Seq C2 exon
GTTCAGGGACCCCTGAGGACCACGGGTTGCAATGATAAGGATTTTGGTAACGTGCGTCTCCATGGTGTCCATCACCTCGATGGTGTCCGGTGCTCGCGGTGGATACGGGATGAGCATGTTCGCGGCTCAGTCCTCTCCTCCGGACCCGTGCTACGACGAGAACGGGAACCCCAGACGCTGCATCCCCGACTTCGTGAACTCCGCTTTCGGGAAGGACGTGCGCGTGTCCAGCACCTGCGGCTCTCCTCCGTCGCGCTACTGCGTGGTGACCGAGAAAGGCGAGGAGAGATCGAGGGACTGCAACATCTGCGACGCCACAGACCCCAAAAAGACCCATCCGCCCGCATACCTGACAGACCTCAACAACCCTCATAACCTCACCTGCTGGCAGTCGGAGAACTACGTGCAATACCCGCAGAACGTGACTCTGACTCTGTCTTTGGGGAAGAAGTTTGAAGTGACTTATGTGAGCCTCCAGTTCTGCTCTCCTCGCCCCGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022531-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.050
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0005512=Laminin_N=WD(100=68.7),PF0005319=Laminin_EGF=WD(100=15.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACATACTTCTCCACCCGGG
R:
CATGGAGACGCACGTTACCAA
Band lengths:
103-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]