DreALTA0019334-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000063730 | osbpl6
Description
oxysterol binding protein-like 6 [Source:ZFIN;Acc:ZDB-GENE-070912-206]
Coordinates
chr9:1423254-1424935:-
Coord C1 exon
chr9:1424765-1424935
Coord A exon
chr9:1423363-1423365
Coord C2 exon
chr9:1423254-1423362
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTCACT
5' ss Score
3.39
3' ss Seq
GTGTGTGTGTGTGTGTTCAGCAG
3' ss Score
7.1
Exon sequences
Seq C1 exon
GTGAAGTCTCCAGATGTGTTTGACCTCTGGGTGTGTAAGCTGCGTCACCATCGTCTGTTCCGGCAGAATGAGATCGTTCGCTCTCCTCGGGACGCTACGCTACGAACCTTCCCTCCGTCTGCTGGTGCCGAGTCTCCCCAGAACACCCCGTCCAGCACACACCCTAAGAAG
Seq A exon
CAG
Seq C2 exon
GGTAAACCCAGTAGTTTTCCCTGGCAGCTGCCGCCGTCCTGCAGTAACGGGCAGAGTAAAGTGGCAGCCTGGTTGCAGGAGTCAGAGGAGATGGACAAATGTGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063730-6-6,6-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.465 A=NA C2=0.387
Domain overlap (PFAM):
C1:
PF154091=PH_8=PD(18.9=29.8)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGAACCTTCCCTCCGTCT
R:
AGCTGCCAGGGAAAACTACTG
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]