DreALTA0019386-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000062664 | oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060503-199]
Coordinates
chr19:20690168-20690643:+
Coord C1 exon
chr19:20690168-20690235
Coord A exon
NA
Coord C2 exon
chr19:20690517-20690643
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAAT
5' ss Score
5.37
3' ss Seq
TGTTATAAGGTGTTTGACAGAGT
3' ss Score
1.09
Exon sequences
Seq C1 exon
CTCGAATCACCCACCGTAAACACAGACGAAGAAGAAACGTCACTCACCGGAGCAGAAGAGTGACAGAG
Seq A exon
NA
Seq C2 exon
AGTTCCTCCCGTCACATCTGACCATGAGTGCCCCGTGCTTTGTACGAACGGTGGCCAGAGGTTTCTCCGGTGGATCAGGACTGTTCAGACCTGCTGTGTTGTGTTCAGACAAAGTCACAGTCACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062664-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCACCGTAAACACAGACG
R:
GGGCACTCATGGTCAGATGTG
Band lengths:
94-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]