DreALTA0019663-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000103379 | pax6a
Description
paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
Coordinates
chr25:14935350-14935803:-
Coord C1 exon
chr25:14935653-14935803
Coord A exon
NA
Coord C2 exon
chr25:14935350-14935443
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
AACAGTATCCTTTACGTCAGGCT
3' ss Score
1.65
Exon sequences
Seq C1 exon
GTCTGGTTCTCAAACAGAAGAGCGAAATGGAGGAGGGAGGAAAAGTTAAGAAATCAAAGAAGACAAGCCAGTAATTCCTCAAGTCACATACCCATCAGCAGCAGCTTCAGCACAAGTGTCTATCAACCAATCCCTCAGCCCACAACGCCAG
Seq A exon
NA
Seq C2 exon
GCTCCATGTTGGGCAGATCAGACACAGCTCTTACGAACACATACAGCGCCCTGCCACCAATGCCAAGCTTCACCATGGCCAACAACCTTCCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103379-25-23,25-22-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(19.3=21.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTTCAGCACAAGTGTCT
R:
GGGCGCTGTATGTGTTCGTAA
Band lengths:
102-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]