DreALTA0019670-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000070818 | pax7b
Description
paired box 7b [Source:ZFIN;Acc:ZDB-GENE-080917-54]
Coordinates
chr23:20938263-20938822:+
Coord C1 exon
chr23:20938263-20938407
Coord A exon
NA
Coord C2 exon
chr23:20938698-20938822
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
TTTATTATCCCATCAGTAAGTTC
3' ss Score
-4.73
Exon sequences
Seq C1 exon
CAGGTGGCAACACCTGACGTGGAAAAACGAATTGAGGAATACAAGCGCGAAAATCCCGGCATGTTTAGTTGGGAGATCCGAGACAAACTGTTGAAGGACGGGGTGTGTGACAGAAGTACAGTTCCCTCAGGTGAGGCCTCATCTG
Seq A exon
NA
Seq C2 exon
TTCTATCAGCCGGGTTCTTCGTGCGCGTTTCGGCAAAAAAGACGACGAGGATGATTGTGACAAAAAAGATGACACTGGAGAGAAAAAAACGAAACACAGTATTGACGGCATTCTGGGAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070818-6-4,6-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.932
Domain overlap (PFAM):
C1:
PF0029213=PAX=FE(36.6=100)
A:
NA
C2:
PF0029213=PAX=PD(6.1=18.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGATCCGAGACAAACTGT
R:
ACGAAGAACCCGGCTGATAGA
Band lengths:
98-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]