DreALTA0019954-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000014527 | pdk3a
Description
pyruvate dehydrogenase kinase, isozyme 3a [Source:ZFIN;Acc:ZDB-GENE-061220-3]
Coordinates
chr24:24803508-24803790:-
Coord C1 exon
chr24:24803713-24803790
Coord A exon
chr24:24803585-24803587
Coord C2 exon
chr24:24803508-24803584
Length
3 bp
Sequences
Splice sites
5' ss Seq
ATGGTACCT
5' ss Score
4.67
3' ss Seq
TAATATTTCACTTCTCTCAGCAG
3' ss Score
3.83
Exon sequences
Seq C1 exon
ATGCCTACGAAACCGCTAAGATGGTGTGTGAGCAATATTACCAAGCTGCCCCTGAGCTGAAGATAGAAGAATTCAATG
Seq A exon
CAG
Seq C2 exon
CAAAGGCTCCTCAGAAACCCATCCAGGCAGTTTATGTCCCCTCGCACCTGTTCCACATGCTGTTTGAATTGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014527-8-10,8-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0251821=HATPase_c=PU(11.2=53.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTAAGATGGTGTGTGAGCA
R:
AGGGGACATAAACTGCCTGGA
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]