DreALTA0019994-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000017910 | pdss1
Description
prenyl (decaprenyl) diphosphate synthase, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4430]
Coordinates
chr24:5991838-5992633:-
Coord C1 exon
chr24:5992507-5992633
Coord A exon
NA
Coord C2 exon
chr24:5991838-5991965
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TGATCTTTCTGATTCAGCAGCTG
3' ss Score
4.66
Exon sequences
Seq C1 exon
GCACAGGTGTAAATATCTGTACTCAACGCCCCGAGTCAGCTGCAGTTTACACAGTGATGCAAAGTTAAAAGATCCTTTCTCACTCGTACAAAAGGACTTGCAAAATATATATGATGACATAAAACAG
Seq A exon
NA
Seq C2 exon
CTGCTGGTGTCTAAAGCAGAGCTGAAAGCGCTGTGTGATTATTACTTTGACGGGAAGGGAAAAGCTTTTCGACCAATGATTGTGATCTTAATGGCTCGAGCTTGTAATGTCCACAGCAATAAAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017910-4-4,4-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0034812=polyprenyl_synt=PU(13.4=79.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTTACACAGTGATGCAAAGT
R:
GCTCTGCTTTAGACACCAGCA
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]