DreALTA0022211-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000079046 | rabl6a
Description
RAB, member RAS oncogene family-like 6a [Source:ZFIN;Acc:ZDB-GENE-030131-6174]
Coordinates
chr5:5177485-5182360:-
Coord C1 exon
chr5:5182211-5182360
Coord A exon
NA
Coord C2 exon
chr5:5177485-5177869
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
TATTTCTTTGTTTTCTATAGATG
3' ss Score
9.96
Exon sequences
Seq C1 exon
GCTCTCGTCCTCTCGGCATTCCACAGCTGACAGACTCTGAGGGATGAGAGAGGGAAGATGCTAAGGAAATGTTTTCCTTCACCGCAGAAAACAGGCGCCCAAAAACCGCAGAATGTGACTGAACCACCGCAGACGAGCACCGTCAACCAG
Seq A exon
NA
Seq C2 exon
ATGATGTCAGTCGACTGGAATGGACCGATTATGGCCCAAAGTAATTAAAATGGCACATTTTGTGAAATAGAAATCTACATCTCCTGACTGGATCCCTAACGAAACCTTCTGGAGATCAATATATTGACCTTTTGACCTTTAGACCGGACGCCGGCTGTCAATATGTTGGGTTAAGAATGTGTGAAGTCGTCAGTCTTTGACACCGCAGTGAGCGTTTCCTTCAAGACCCATCTTTCGTATTCTTGGACTGTTAAAGAAGCTTCGGTCGGCATGTTTACGGCTCTGAAGAAGCTGGTGGGCTCCGAAGCCGTGCAGCTCAGGGATAGAAACATTCCTGCAGGCCTGCAATCCATGAACCAGAGTCTACAGAGACGCTTCGCCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079046-0-2,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.023
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCACCGCAGAAAACAGG
R:
ATCGGTCCATTCCAGTCGACT
Band lengths:
105-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]