DreALTA0022549-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000044179 | rbms2a
Description
RNA binding motif, single stranded interacting protein 2a [Source:ZFIN;Acc:ZDB-GENE-030912-2]
Coordinates
chr11:1874658-1890590:+
Coord C1 exon
chr11:1874658-1874776
Coord A exon
NA
Coord C2 exon
chr11:1890436-1890590
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCG
5' ss Score
9.67
3' ss Seq
TTGTTTTCCCTCTTCAGCAGCAA
3' ss Score
6
Exon sequences
Seq C1 exon
TCCTCTCACTGACGTCAGCGGCCGCTCCGGACACCGCGCCGAGGAAAATGCTGCTCTCCGTACCGCCGCGCACGGGATTCAACCCCTACAGCGGATACAACAGCAGAAACGGCAAAAAG
Seq A exon
NA
Seq C2 exon
CAAGCCTATGTGTCCTCCAGCCAGCAGATGGCGCTGTCCAGTCCCAACAGTAGCAGCAGCAGTATTGCAGGAGAACAGCTCAGCAAAACCAACCTGTACATCCGCGGCCTTCATCCTGGCACCACTGACCAGGACTTGGTGAAGCTCTGCCAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044179-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.453
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0007617=RRM_1=PU(29.4=37.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCTACAGCGGATACAACA
R:
TGCTACTGTTGGGACTGGACA
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]