DreALTA0022707-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000042833 | rffl
Description
ring finger and FYVE-like domain containing E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-040426-2274]
Coordinates
chr15:4576742-4587803:-
Coord C1 exon
chr15:4587738-4587803
Coord A exon
NA
Coord C2 exon
chr15:4576742-4576927
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
CCCTGTGTGTTTTCCAGTAGGTG
3' ss Score
8.98
Exon sequences
Seq C1 exon
ATGGCAAAGGCTTGGACTTTATATCCTTGAACGTCACAGTTTACAAGACACTGAGTCACTGTCAAG
Seq A exon
NA
Seq C2 exon
GTGTGGAGCATGTGGGCCAGCTGCTGCGGCTGGCTATGTCTGGATGATTCCAGTATGGAAGACACCAGAGGAAGCCAACAGCGCCAGGCCTTCACGAACTCAGGCTTCAGCAGTTACCCGTCTCCCACTGCACCAGAACACACATGCAAGTCCTGTGGAGGTCGCTTCGACAGTTTAACCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042833-1-5,1-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.034
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0231811=FYVE_2=PU(37.1=44.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAAAGGCTTGGACTTTAT
R:
CAGACATAGCCAGCCGCAG
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]