DreALTA0023383-1/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000019778 | rps6
Description
ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
Coordinates
chr1:44347617-44348300:-
Coord C1 exon
chr1:44348229-44348300
Coord A exon
NA
Coord C2 exon
chr1:44347617-44347712
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
CCGCCACCGGCTGCCAAAAGCTG
3' ss Score
-0.03
Exon sequences
Seq C1 exon
TGAGACTACGAGTCGGATATCCGCTCTCTTTTCCGTGGTGGACTCCAAGCGAGAAAGTCCTCCATCATGAAG
Seq A exon
NA
Seq C2 exon
CTGATAGAAGTTGACGATGAACGCAAGCTGAGAATCTTCTACGAGAAGCGCATGGCCACAGAGGTGGCTGCAGACTCTCTGGGTGACGAGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019778-1-2,1-1,1-0-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0109214=Ribosomal_S6e=PU(0.8=50.0)
A:
NA
C2:
PF0109214=Ribosomal_S6e=FE(33.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGACTCCAAGCGAGAAAG
R:
ACTCGTCACCCAGAGAGTCTG
Band lengths:
127-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]