DreALTA0023783-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000060865 | scai
Description
suppressor of cancer cell invasion [Source:ZFIN;Acc:ZDB-GENE-060526-57]
Coordinates
chr5:31395530-31411840:+
Coord C1 exon
chr5:31395530-31395759
Coord A exon
chr5:31411726-31411728
Coord C2 exon
chr5:31411729-31411840
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGC
5' ss Score
5.52
3' ss Seq
TTTTTGTGTTTTGTTTTCAGCAG
3' ss Score
9.38
Exon sequences
Seq C1 exon
AATTCAACTGGCCAGACTGAACCGTCGACCGCAGCAGATGCCGAATGGCAGATACTCCCTGCTTTTCCCTGGGAGGGTGATTTGAATGAGTTGGATGTAAATGACGGTGCGCCACCGCACTGGATGTCTAGATTTGTGTCGGGGAGAGATTTACAAGCGCGCGCTACCCGGAGACGCCGTTCTTGAGGAGCTGAAACAGAAGAAGCTGCTCTGAACTACATCAGTCTCAG
Seq A exon
CAG
Seq C2 exon
CTGCCATGACAGGGGTGGGGGCAGAGGATGACATCCCTCTCTGTGAGAGGAAAACTGTCACTGACTTCTGCTATCTCCTGGACAAGTCCAAGCAGCTTTTCAATGGCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060865-0-2,0-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF120703=DUF3550=PU(2.8=38.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTTCTTGAGGAGCTGAAA
R:
TCTCACAGAGAGGGATGTCATCC
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]