DreALTA0023889-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000043497 | scrn2
Description
secernin 2 [Source:ZFIN;Acc:ZDB-GENE-040724-75]
Coordinates
chr20:14774780-14775586:-
Coord C1 exon
chr20:14775387-14775586
Coord A exon
chr20:14774970-14774995
Coord C2 exon
chr20:14774780-14774969
Length
26 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
GAGGTGATTTGTGTTGTCAGAGG
3' ss Score
2.69
Exon sequences
Seq C1 exon
GCTGGGTCTGGAGCGAGGGGACAGTGCTCGGGCGGCTCTGAATGTAATCACGGCTCTGCTGGAGCAGTTTGGTCAGGGTGGAGCCTGCAGGGAGACCAGCGAACCCTTTAGTTATCACAACACCTTCTTATTAGTGGACCGACAGGAAGCATGGGTGCTGGAGACTGCTGGGAAACTCTGGGCTGCACAGAAAGTCACAG
Seq A exon
AGGGTGTAAAGAACATTTCTAACCAG
Seq C2 exon
CTGACGATAGACTTCGAGATCTCCGCTGAGCATCCGGATCTGCGCTCTGTGGCTCAGGCTCAGGGCTGGTGGAGTGGAGAGGGCGACTTCAGCTTCACTGCCGTTTTCAGCCCTGATCATCCGCCTGCCAGGATGGAAATGGCCAAGCAACGCTACAGGGGCGGCACAGCCCTGCTCCAGCAGCACAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043497-4-5,4-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.110
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(28.8=100)
A:
NA
C2:
PF0357710=Peptidase_C69=PD(30.0=95.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCTGGGCTGCACAGAAAG
R:
GTGAAGCTGAAGTCGCCCTC
Band lengths:
125-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]