DreALTA0023901-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000037362 | scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:ZFIN;Acc:ZDB-GENE-050302-80]
Coordinates
chr7:28333792-28336362:-
Coord C1 exon
chr7:28336228-28336362
Coord A exon
NA
Coord C2 exon
chr7:28333792-28333914
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
ATATCTCTTTTTCGCAGAAGGCC
3' ss Score
1.11
Exon sequences
Seq C1 exon
ATGTGGACGAATGTGTCTTCAACAATGGCGGCTGTCAGCATGTATGTGTCAACACCATGGGAAGCTATGAGTGTCGCTGCAAGCAAGGCTTTTTCCTGAGTGACAATCAGCACACATGCATCCATCGCTCCGTGG
Seq A exon
NA
Seq C2 exon
GCCTGAGCTGCATGAATAAAGAGCATGGCTGTGGTCATATCTGTAAGGAGAGTCCAAAAGGTGGCGTGGCCTGTGAGTGCCGGCCGGGCTTCGAACTGGCCAAGAACCAGCGGGGCTGCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037362-3-5,3-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PD(12.5=6.5),PF146701=FXa_inhibition=WD(100=78.3)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=86.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGAGTGTCGCTGCAAGCAA
R:
ATGACCACAGCCATGCTCTTT
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]