DreALTA0023913-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000095515 | sdccag3
Description
serologically defined colon cancer antigen 3 [Source:ZFIN;Acc:ZDB-GENE-060526-242]
Coordinates
chr5:50558619-50562027:-
Coord C1 exon
chr5:50561936-50562027
Coord A exon
NA
Coord C2 exon
chr5:50558619-50558924
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
ATCCCTCTGCACTCTGTCAGCCT
3' ss Score
3.52
Exon sequences
Seq C1 exon
ATGAGCCAAAGCAAGATGAGCTGAATCCATTTTCGTTCAAGGAGTTTATCCGAAACAAAAACCAGCCGTCATGTTCCACAGAAGCCACAGAG
Seq A exon
NA
Seq C2 exon
CCTCCTGAAAGTGAACCCGACGAGACATGGATTGAAAGCCACCAACGGTCAGCCATTGAAGGTTCTCCTGACTTTGAACTATGTGGGGCATCAGACATCAGTGCTTACTCTGAGCAGTCATCTCTGTGCAGTGATGAGAGAGAAGCGGCTGAATGGGAACTGGGTCAGTCTGACTTCCTGCCAAAAAAGCACTTATCCAGAATCAGCACTGGAAGCTATGAGGGGGATGAAGAGACTTCAGTGATTGATATTTCCTTCCATCATAAGAGAGGCAATGCTGAAAATGGCACAAAGAATCTCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095515-2-3,2-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=NA C2=0.459
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF154191=LNP1=PU(19.9=20.7),PF149921=TMCO5=PU(16.3=17.8),PF087025=Fib_alpha=PU(16.8=16.3),PF057016=WEMBL=PU(12.3=13.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCATGTTCCACAGAAGCCA
R:
AGCCGCTTCTCTCTCATCACT
Band lengths:
176-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]