DreALTA0024058-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000062352 | sema4ab
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ab [Source:ZFIN;Acc:ZDB-GENE-060503-363]
Coordinates
chr19:24800760-24804197:+
Coord C1 exon
chr19:24800760-24800848
Coord A exon
chr19:24804082-24804096
Coord C2 exon
chr19:24804097-24804197
Length
15 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
TTGACCTCTAACCTTCTCAGCTC
3' ss Score
6.55
Exon sequences
Seq C1 exon
GGCTCAGGATGTAGATGAGGGTAAAGTATCAGAGCAGTGCTCCAGTGTGAACCTCAGATCCCGCTCTGGCCAGCCCCAAAACACCCAGA
Seq A exon
CTCTCTGTCCCCCAG
Seq C2 exon
GTGAAGTGCTGTCTGTGTCACTCAATGAGGTTATTAACCTACAATGCCCCGAAGCATCAAACCTTGCTAAATGCCACTGGGAGCGTCTCAACAGCCAGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062352-16-19,16-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=NA C2=0.554
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(44.1=100),PF138951=Ig_2=PU(6.5=19.4)
A:
NA
C2:
PF0143720=PSI=PD(0.1=0.0),PF138951=Ig_2=PD(92.4=30.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCAGTGTGAACCTCAGA
R:
GCTTCGGGGCATTGTAGGTTA
Band lengths:
107-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]