DreALTA0024397-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000088202 | sh3d19
Description
SH3 domain containing 19 [Source:ZFIN;Acc:ZDB-GENE-050522-481]
Coordinates
chr1:23724079-23760105:-
Coord C1 exon
chr1:23759973-23760105
Coord A exon
NA
Coord C2 exon
chr1:23724079-23724235
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TGCCACCATCCTATGAGCAGGTG
3' ss Score
5.34
Exon sequences
Seq C1 exon
GAGGCCAGAGATAACCATCCTATCAGCAGAGCCGTTTGCAGCTACTTGGTATCCTGTGCCATCTGGACGGTTTTCATCTACAGCTTTTACCACACAACCAGTCTGGAGTGAGAATGCTCTGACCTCTGCGCAG
Seq A exon
NA
Seq C2 exon
GTGATCAAGGAGAAGACCCAGGAGCAGGTCACCACTCCTTCACCATCTCCACGACACTCGTACACTACAACTATTGCAACACAGACTGACTCATTAGAGGAGAATGTCACAAGTCCAGATTCCTGTACGTCCTTACAACAAAACCAACAACCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088202-7-8,7-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.378 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF149791=TMEM52=PU(45.7=71.1)
A:
NA
C2:
PF149791=TMEM52=PD(51.4=60.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCATCTGGACGGTTTTCA
R:
GCTCCTGGGTCTTCTCCTTGA
Band lengths:
103-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]